species:   Rhsol
pid:       PID0462
parent:    Rhi-milR-136
paralog:   
locus:     KB317696.1:2178060-2178149
matures:   ['UGGAAGCAGGUAUUGGAUGAUG', 'UUGCUGGUAUUUGCUCUCAUU']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317696.1:2178060-2178149

0 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

        ************************     ***********************                              
AUGAGCUACAUGGAAGCAGGUAUUGGAUGAUGGUUUACAUUGCUGGUAUUUGCUCUCAUUCCCAAAAAACCCAUAGAUUGGGUGGCCUUU
....(((..((((.((((((((((((.(((((.....))))))))))))))))).)))).........(((((.....))))))))....
----------UGGAAGCAGGUAUUGGAUGAUG---------------------------------------------------------- l=22 a=2 c
---------------------------------------UUGCUGGUAUUUGCUCUCAUU------------------------------ l=21 a=0 c*
----------UGGAAGCAGGUAUUGGAUGAUG---------------------------------------------------------- l=22 a=2 ma
---------------------------------------UUGCUGGUAUUUGCUCUCAUU------------------------------ l=21 a=0 ma*

----------UGGAAGCAGGUAUUGGAUGAUG---------------------------------------------------------- l=22 a=2 (c,ma)
-----------GGAAGCAGGUAUUGGAUGAUGG--------------------------------------------------------- l=22 a=1 

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
